Hello,
When the job skips the nsf files, does it fail or succeeds? If it fails, what is the error message that you receive in the job log? Is the Lotus server a remote server? What is the v ersion of Lotus? Is it a partitoned server?
Refer to the following technotes which might help in resoving the problem:
Title:When trying to backup Lotus/Domino Databases the job fails with the following error message: "Unable to open the item \lotus\domino\FILE.NSF - skipped. Cannot write or create file (file or disk is read-only)."
http://support.veritas.com/docs/249688
Title: Backup Exec 9.x backup operation fails because of skipped files when backing up Lotus databases using the Lotus Domino Agent.
http://support.veritas.com/docs/260354
Title: When using the Backup Exec for Windows NT and Windows 2000 Lotus Notes R5/R6 Agent, "*.nsf and *.ntf" files are reported as skipped during a backup operation
http://support.veritas.com/docs/241916
If the problem persists, revert with details to the above questions.
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Regards.