Hello Noodles,
you can copy the entire data folder from the backup Exec installation directory to the another partition so in case if you server crashes u just need to install the Backup Exec and replace the new data folder with the old data folder and restart the services that should bring all your jobs and configuration back.
Path for the DATA folder "C:\Program Files\Symantec\Backup Exec\data"
please stop the SQL server service for the backup Exec from the services.msc window first and then copy it to the other location.....SQLSERVER(BKUPEXEC) service.
Let me know if this answers your questions