Yea,
I can't speak to the differences completely, as I don't do much Unix administration myself. I do support 1 mail gateway device that has some Unix underpinnings and I know enough to be dangerous, but not enough to feel comfortable with it.
In terms of reporting, I would be curious as to where the reporting would be less for the Windows Version of NBU. I 'believe' (and correct me if I am wrong Unix NBU Admins) all the commands that are available in the Unix NBU are also available in the Windows NBU. Then it is just about massaging this data into a good readable format. And with Unix, you definitely can massage that data 'easier' and with less lines of code , but with the right tools in windows, you 'can' get it done, it just might take a little extra doing (and knowing 3 different languages, VBS, cmd shell, etc)
I 'think' that is where Powershell is supposed to help, in that it replaces all of this and is one language to learn. Time will tell I guess.
Anyways, good luck with your deployment, and realize that regardless, you have a good crew on this forum that can help you with whatever platform you go with!
AK