Hi Simon,
This from a large corporation who wanted to resolve the issue as well
"
We have 1 journal mailbox defined within Exchange. Once that destination journal mailbox reaches 30,000 msgs we change the "alternate recipient" on that same journal mailbox and so on every 30,000 msgs....So since Exchange single instance is per journal mailbox, that journal mailbox is always the same and therefore maintains single instance before EV even gets it.
"
Not sure the details of exactly how they go abou this but hopefully this will put you on the right path.
let me know if you need more information.
Cheers,
Mike