Is the HBA and PCI bus channel the same where you have your drives and disks, like a mix of a 2 port HBA with one port seeing tape drives and the other the disks? if it is this can explain why it gets faster after the tape backups are done, because they are sharing that resource. Other option is on the switch, do you have any IOA anabled on your switch? this normaly gives priority to Tape backups and that can slow down your disk jobs.